Original Research

Published on 15 Feb 2024

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

in Systems Microbiology

Pierfrancesco Novielli
Donato Romano
Michele Magarelli
Pierpaolo Di Bitonto
Domenico Diacono
Annalisa Chiatante
Giuseppe Lopalco
Daniele Sabella
Vincenzo Venerito
Pasquale Filannino

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1348974

4,792 views
13 citations

Original Research

Published on 14 Feb 2024

Discovery of novel replication proteins for large plasmids in cyanobacteria and their potential applications in genetic engineering

in Systems Microbiology

Kazuma Ohdate
Minori Sakata
Kaisei Maeda
Yutaka Sakamaki
Kaori Nimura-Matsune
Ryudo Ohbayashi
Wolfgang R. Hess
Satoru Watanabe

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1311290

2,531 views
3 citations

Methods

Published on 12 Feb 2024

Unraveling the microbiome-metabolome nexus: a comprehensive study protocol for personalized management of Behçet’s disease using explainable artificial intelligence

in Systems Microbiology

Sabina Tangaro
Giuseppe Lopalco
Daniele Sabella
Vincenzo Venerito
Pierfrancesco Novielli
Donato Romano
Alessia Di Gilio
Jolanda Palmisani
Gianluigi de Gennaro
Pasquale Filannino

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1341152

1,516 views

Original Research

Published on 09 Feb 2024

Effects of type of substrate and dilution rate on fermentation in serial rumen mixed cultures

in Systems Microbiology

Emilio M. Ungerfeld
Nathaly Cancino-Padilla
Nelson Vera-Aguilera
M. Carolina Scorcione
Marcelo Saldivia
Lorena Lagos-Pailla
Milena Vera
Cristián Cerda
Camila Muñoz
Natalie Urrutia

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1356966

1,862 views

Editorial

Published on 09 Feb 2024

Editorial: Risk assessment of mycotoxins on metabolism, immunity, and intestinal health

in Systems Microbiology

Einar Ringø
Xiaoyum He
Xiao Li Shen
Jing Jin
Fuguo Xing

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1367261

1,042 views

Original Research

Published on 08 Feb 2024

Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method

in Systems Microbiology

Tlaleo A. Marole
Thulani Sibanda
Elna M. Buys

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1325268

1,881 views
3 citations

Original Research

Published on 08 Feb 2024

Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.)

in Systems Microbiology

Petra Patakova
Maryna Vasylkivska
Karel Sedlar
Katerina Jureckova
Matej Bezdicek
Petra Lovecka
Barbora Branska
Petr Kastanek
Karel Krofta

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1305338

2,360 views

Original Research

Published on 08 Feb 2024

Genetically supported causality between gut microbiota, immune cells and morphine tolerance: a two-sample Mendelian randomization study

in Systems Microbiology

Shuai Han
Jiapei Gao
Zi Wang
Yinggang Xiao
Yali Ge
Yongxin Liang
Ju Gao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1343763

2,662 views
4 citations

Original Research

Published on 07 Feb 2024

Oral_voting_transfer: classification of oral microorganisms’ function proteins with voting transfer model

in Systems Microbiology

Wenzheng Bao
Yujun Liu
Baitong Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1277121

1,631 views
12 citations

Review

Published on 02 Feb 2024

Bifidobacterium species viability in dairy-based probiotic foods: challenges and innovative approaches for accurate viability determination and monitoring of probiotic functionality

in Systems Microbiology

Thulani Sibanda
Tlaleo Azael Marole
Ursula Louise Thomashoff
Mapitsi S. Thantsha
Elna M. Buys

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1327010

5,848 views
2 citations

Original Research

Published on 02 Feb 2024

Mendelian randomization analysis reveals an independent causal relationship between four gut microbes and acne vulgaris

in Systems Microbiology

Yujia Wu
Xiaoyun Wang
Wenjuan Wu
Jiankang Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1326339

3,103 views
6 citations

Original Research

Published on 02 Feb 2024

MLFLHMDA: predicting human microbe-disease association based on multi-view latent feature learning

in Systems Microbiology

Ziwei Chen
Liangzhe Zhang
Jingyi Li
Mingyang Fu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1353278

993 views
1 citation

Technology and Code

Published on 31 Jan 2024

CyanoCyc cyanobacterial web portal

in Systems Microbiology

Lisa R. Moore
Ron Caspi
Douglas A. Campbell
John R. Casey
Sophie Crevecoeur
David J. Lea-Smith
Bin Long
Naaman M. Omar
Suzanne M. Paley
Nicolas M. Schmelling

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1340413

7,169 views
4 citations

Editorial

Published on 30 Jan 2024

Editorial: The role of commensal microbiota in drug metabolism: friend or foe?

in Systems Microbiology

Jing-Hua Wang
Dong-Woo Lim
Mukesh Kumar Yadav
Xiao Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1364747

1,209 views

Original Research

Published on 29 Jan 2024

Causal relationship between gut microbiota and hidradenitis suppurativa: a two-sample Mendelian randomization study

in Systems Microbiology

Chengling Liu
Xingchen Liu
Xin Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1302822

2,871 views
3 citations

Review

Published on 29 Jan 2024

Linkages between rumen microbiome, host, and environment in yaks, and their implications for understanding animal production and management

in Systems Microbiology

Weiwei Wang
Yuntao Dong
Wei Guo
Xiao Zhang
A. Allan Degen
Sisi Bi
Luming Ding
Xiang Chen
Ruijun Long

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1301258

3,692 views
3 citations

Navigation group

Articles

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

Discovery of novel replication proteins for large plasmids in cyanobacteria and their potential applications in genetic engineering

Unraveling the microbiome-metabolome nexus: a comprehensive study protocol for personalized management of Behçet’s disease using explainable artificial intelligence

Effects of type of substrate and dilution rate on fermentation in serial rumen mixed cultures

Editorial: Risk assessment of mycotoxins on metabolism, immunity, and intestinal health

Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method

Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.)

Genetically supported causality between gut microbiota, immune cells and morphine tolerance: a two-sample Mendelian randomization study

Oral_voting_transfer: classification of oral microorganisms’ function proteins with voting transfer model

Bifidobacterium species viability in dairy-based probiotic foods: challenges and innovative approaches for accurate viability determination and monitoring of probiotic functionality

Mendelian randomization analysis reveals an independent causal relationship between four gut microbes and acne vulgaris

MLFLHMDA: predicting human microbe-disease association based on multi-view latent feature learning

CyanoCyc cyanobacterial web portal

Editorial: The role of commensal microbiota in drug metabolism: friend or foe?

Causal relationship between gut microbiota and hidradenitis suppurativa: a two-sample Mendelian randomization study

Linkages between rumen microbiome, host, and environment in yaks, and their implications for understanding animal production and management