Review

Published on 04 Apr 2024

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

in Systems Microbiology

Brook E. Santangelo
Madison Apgar
Angela Sofia Burkhart Colorado
Casey G. Martin
John Sterrett
Elena Wall
Marcin P. Joachimiak
Lawrence E. Hunter
Catherine A. Lozupone

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1351678

1,473 views
1 citation

Original Research

Published on 22 Mar 2024

Causal associations of genetically predicted gut microbiota and blood metabolites with inflammatory states and risk of infections: a Mendelian randomization analysis

in Systems Microbiology

Yingjian Liu
Qian Zhu
Gongjie Guo
Zhipeng Xie
Senlin Li
Chengyang Lai
Yonglin Wu
Liansheng Wang
Shilong Zhong

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1342653

3,449 views
2 citations

Original Research

Published on 21 Mar 2024

Enhancing soil health and strawberry disease resistance: the impact of calcium cyanamide treatment on soil microbiota and physicochemical properties

in Systems Microbiology

Ying-chun Du
Can-sheng Yuan
Yu-qi Song
Ying Yang
Qing-song Zheng
Qiong Hou
Di Wang
Lin Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1366814

1,621 views
1 citation

Methods

Published on 20 Mar 2024

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

in Systems Microbiology

Ting Wang
Zu-Guo Yu
Jinyan Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1339156

1,246 views
1 citation

Original Research

Published on 18 Mar 2024

Benefit analysis of the auto-verification system of intelligent inspection for microorganisms

in Systems Microbiology

Yu-Hsiang Ou
Yung-Ta Chang
Ding-Ping Chen
Chun-Wei Chuang
Kuo-Chien Tsao
Chiu-Hsiang Wu
An-Jing Kuo
Huey-Ling You
Chung-Guei Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1334897

1,859 views
1 citation

Original Research

Published on 12 Mar 2024

Super resolution-based methodology for self-supervised segmentation of microscopy images

in Systems Microbiology

Vidya Bommanapally
Dilanga Abeyrathna
Parvathi Chundi
Mahadevan Subramaniam

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1255850

1,062 views

Original Research

Published on 11 Mar 2024

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

in Systems Microbiology

Peng-Kai Yin
Huai Xiao
Zhi-Bin Yang
Da-Song Yang
Yin-He Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1288051

1,922 views
1 citation

Original Research

Published on 06 Mar 2024

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

in Systems Microbiology

Mia S. C. Yu
Dapi Menglin Chiang
Marlene Reithmair
Agnes Meidert
Florian Brandes
Gustav Schelling
Christina Ludwig
Chen Meng
Benedikt Kirchner
Christian Zenner

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1361270

2,556 views
1 citation

Review

Published on 05 Mar 2024

Role of the gut microbiota in the pathogenesis of endometriosis: a review

in Systems Microbiology

Cuishan Guo
Chiyuan Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1363455

7,923 views
2 citations

Review

Published on 05 Mar 2024

Metabolites: a converging node of host and microbe to explain meta-organism

in Systems Microbiology

Nabarun Chakraborty

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1337368

1,624 views
2 citations

Original Research

Published on 05 Mar 2024

Metagenomic evidence for antibiotic-associated actinomycetes in the Karamay Gobi region

in Systems Microbiology

Shuai Yang
Wei Zhang
Bo Yang
Xin Feng
Yiyang Li
Xiaolin Li
Qin Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1330880

1,748 views

Original Research

Published on 01 Mar 2024

An optimized culturomics strategy for isolation of human milk microbiota

in Systems Microbiology

Fan Wang
Lingmin Yu
Yuting Ren
Qianwen Zhang
Shanshan He
Minlei Zhao
Zhili He
Qi Gao
Jianguo Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1272062

2,495 views
5 citations

Methods

Published on 27 Feb 2024

A simple protocol for cultivating the bacterivorous soil nematode Caenorhabditis elegans in its natural ecology in the laboratory

in Systems Microbiology

Rocel Amor Indong
Jong Min Park
Jin-Kyung Hong
Eun Sun Lyou
Taeman Han
Jong Kwang Hong
Tae Kwon Lee
Jin I. Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1347797

2,480 views

Original Research

Published on 21 Feb 2024

The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy

in Systems Microbiology

Tawni L. Crippen
Dongmin Kim
Toni L. Poole
Sonja L. Swiger
Robin C. Anderson

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1327841

2,399 views
1 citation

Original Research

Published on 20 Feb 2024

High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study

in Systems Microbiology

Victor Castañeda-Monsalve
Laura-Fabienne Fröhlich
Sven-Bastiaan Haange
Masun Nabhan Homsi
Ulrike Rolle-Kampczyk
Qiuguo Fu
Martin von Bergen
Nico Jehmlich

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1349367

4,496 views
3 citations

Original Research

Published on 15 Feb 2024

Investigating causal associations among gut microbiota, metabolites, and psoriatic arthritis: a Mendelian randomization study

in Systems Microbiology

Xiao Xu
Lin-yun Wu
Shu-yun Wang
Min Yan
Yuan-Hong Wang
Li Li
Zhi-ling Sun
Ji-Xiang Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1287637

4,656 views

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Articles

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Causal associations of genetically predicted gut microbiota and blood metabolites with inflammatory states and risk of infections: a Mendelian randomization analysis

Enhancing soil health and strawberry disease resistance: the impact of calcium cyanamide treatment on soil microbiota and physicochemical properties

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

Benefit analysis of the auto-verification system of intelligent inspection for microorganisms

Super resolution-based methodology for self-supervised segmentation of microscopy images

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

Role of the gut microbiota in the pathogenesis of endometriosis: a review

Metabolites: a converging node of host and microbe to explain meta-organism

Metagenomic evidence for antibiotic-associated actinomycetes in the Karamay Gobi region

An optimized culturomics strategy for isolation of human milk microbiota

A simple protocol for cultivating the bacterivorous soil nematode Caenorhabditis elegans in its natural ecology in the laboratory

The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy

High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study

Investigating causal associations among gut microbiota, metabolites, and psoriatic arthritis: a Mendelian randomization study