Original Research

Published on 25 Jun 2021

Whole-Genome Metagenomic Analysis of the Gut Microbiome in HIV-1-Infected Individuals on Antiretroviral Therapy

in Systems Microbiology

Xiangning Bai
Aswathy Narayanan
Piotr Nowak
Shilpa Ray
Ujjwal Neogi
Anders Sönnerborg

Frontiers in Microbiology

doi 10.3389/fmicb.2021.667718

15,277 views
24 citations

Review

Published on 22 Jun 2021

Key Technologies for Progressing Discovery of Microbiome-Based Medicines

in Systems Microbiology

Remy B. Young
Vanessa R. Marcelino
Michelle Chonwerawong
Emily L. Gulliver
Samuel C. Forster

Frontiers in Microbiology

doi 10.3389/fmicb.2021.685935

11,555 views
16 citations

Mini Review

Published on 22 Jun 2021

Tapping Into Actinobacterial Genomes for Natural Product Discovery

in Systems Microbiology

Tanim Arpit Singh
Ajit Kumar Passari
Anjana Jajoo
Sheetal Bhasin
Vijai Kumar Gupta
Abeer Hashem
Abdulaziz A. Alqarawi
Elsayed Fathi Abd_Allah

Frontiers in Microbiology

doi 10.3389/fmicb.2021.655620

7,147 views
15 citations

Original Research

Published on 22 Jun 2021

Host Phylogeny and Diet Shape Gut Microbial Communities Within Bamboo-Feeding Insects

in Systems Microbiology

Kuanguan Huang
Jie Wang
Junhao Huang
Shouke Zhang
Alfried P. Vogler
Quanquan Liu
Yongchun Li
Maowei Yang
You Li
Xuguo Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2021.633075

6,516 views
38 citations

Original Research

Published on 22 Jun 2021

Microbiome and Metabolomics Reveal the Effects of Different Feeding Systems on the Growth and Ruminal Development of Yaks

in Systems Microbiology

Chun Huang
Fei Ge
Xixi Yao
Xian Guo
Pengjia Bao
Xiaoming Ma
Xiaoyun Wu
Min Chu
Ping Yan
Chunnian Liang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.682989

8,892 views
62 citations

Review

Published on 18 Jun 2021

Role of Vaginal Microbiota Dysbiosis in Gynecological Diseases and the Potential Interventions

in Systems Microbiology

Yiwen Han
Zhaoxia Liu
Tingtao Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2021.643422

22,724 views
54 citations

Original Research

Published on 18 Jun 2021

Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences

in Systems Microbiology

Michal Ziemski
Treepop Wisanwanichthan
Nicholas A. Bokulich
Benjamin D. Kaehler

Frontiers in Microbiology

doi 10.3389/fmicb.2021.644487

7,723 views
21 citations

Methods

Published on 17 Jun 2021

An Integrated Database of Small RNAs and Their Interplay With Transcriptional Gene Regulatory Networks in Corynebacteria

in Systems Microbiology

Mariana Teixeira Dornelles Parise
Doglas Parise
Flavia Figueira Aburjaile
Anne Cybelle Pinto Gomide
Rodrigo Bentes Kato
Martin Raden
Rolf Backofen
Vasco Ariston de Carvalho Azevedo
Jan Baumbach

Frontiers in Microbiology

doi 10.3389/fmicb.2021.656435

3,844 views
4 citations

Original Research

Published on 16 Jun 2021

Diversity and Distribution of Uncultured and Cultured Gaiellales and Rubrobacterales in South China Sea Sediments

in Systems Microbiology

Rou-Wen Chen
Yuan-Qiu He
Lin-Qing Cui
Cun Li
Song-Biao Shi
Li-Juan Long
Xin-Peng Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2021.657072

5,498 views
21 citations

Correction

Published on 09 Jun 2021

Corrigendum: Assessing the Hybrid Effects of Neutral and Niche Processes on Gut Microbiome Influenced by HIV Infection

in Systems Microbiology

Guanshu Yin
Yao Xia

Frontiers in Microbiology

doi 10.3389/fmicb.2021.710865

888 views

Technology and Code

Published on 08 Jun 2021

Efficient Detection of Longitudinal Bacteria Fission Using Transfer Learning in Deep Neural Networks

in Systems Microbiology

Carlos Garcia-Perez
Keiichi Ito
Javier Geijo
Roman Feldbauer
Nico Schreiber
Wolfgang zu Castell

Frontiers in Microbiology

doi 10.3389/fmicb.2021.645972

3,228 views
7 citations

Original Research

Published on 07 Jun 2021

Characterization of Bacterial Community Dynamics of the Human Mouth Throughout Decomposition via Metagenomic, Metatranscriptomic, and Culturing Techniques

in Systems Microbiology

Emily C. Ashe
André M. Comeau
Katie Zejdlik
Seán P. O’Connell

Frontiers in Microbiology

doi 10.3389/fmicb.2021.689493

5,984 views
11 citations

Original Research

Published on 07 Jun 2021

A Metagenomic Insight Into the Hindgut Microbiota and Their Metabolites for Dairy Goats Fed Different Rumen Degradable Starch

in Systems Microbiology

Xiaoying Han
Xinjian Lei
Xuexin Yang
Jing Shen
Lixin Zheng
Chunjia Jin
Yangchun Cao
Junhu Yao

Frontiers in Microbiology

doi 10.3389/fmicb.2021.651631

5,219 views
15 citations

Methods

Published on 04 Jun 2021

Visualization of Respiratory Commensal Bacteria in Context of Their Natural Host Environment

in Systems Microbiology

Joao P. P. Bonifacio
Mirco Schmolke

Frontiers in Microbiology

doi 10.3389/fmicb.2021.678389

3,156 views

Original Research

Published on 02 Jun 2021

Estimating the Time Since Deposition of Saliva Stains With a Targeted Bacterial DNA Approach: A Proof-of-Principle Study

in Systems Microbiology

Celia Díez López
Manfred Kayser
Athina Vidaki

Frontiers in Microbiology

doi 10.3389/fmicb.2021.647933

6,730 views
24 citations

Original Research

Published on 02 Jun 2021

Model Selection Reveals the Butyrate-Producing Gut Bacterium Coprococcus eutactus as Predictor for Language Development in 3-Year-Old Rural Ugandan Children

in Systems Microbiology

Remco Kort
Job Schlösser
Alan R. Vazquez
Prudence Atukunda
Grace K. M. Muhoozi
Alex Paul Wacoo
Wilbert F. H. Sybesma
Ane C. Westerberg
Per Ole Iversen
Eric D. Schoen

Frontiers in Microbiology

doi 10.3389/fmicb.2021.681485

9,071 views
15 citations

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Articles

Whole-Genome Metagenomic Analysis of the Gut Microbiome in HIV-1-Infected Individuals on Antiretroviral Therapy

Key Technologies for Progressing Discovery of Microbiome-Based Medicines

Tapping Into Actinobacterial Genomes for Natural Product Discovery

Host Phylogeny and Diet Shape Gut Microbial Communities Within Bamboo-Feeding Insects

Microbiome and Metabolomics Reveal the Effects of Different Feeding Systems on the Growth and Ruminal Development of Yaks

Role of Vaginal Microbiota Dysbiosis in Gynecological Diseases and the Potential Interventions

Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences

An Integrated Database of Small RNAs and Their Interplay With Transcriptional Gene Regulatory Networks in Corynebacteria

Diversity and Distribution of Uncultured and Cultured Gaiellales and Rubrobacterales in South China Sea Sediments

Corrigendum: Assessing the Hybrid Effects of Neutral and Niche Processes on Gut Microbiome Influenced by HIV Infection

Efficient Detection of Longitudinal Bacteria Fission Using Transfer Learning in Deep Neural Networks

Characterization of Bacterial Community Dynamics of the Human Mouth Throughout Decomposition via Metagenomic, Metatranscriptomic, and Culturing Techniques

A Metagenomic Insight Into the Hindgut Microbiota and Their Metabolites for Dairy Goats Fed Different Rumen Degradable Starch

Visualization of Respiratory Commensal Bacteria in Context of Their Natural Host Environment

Estimating the Time Since Deposition of Saliva Stains With a Targeted Bacterial DNA Approach: A Proof-of-Principle Study

Model Selection Reveals the Butyrate-Producing Gut Bacterium Coprococcus eutactus as Predictor for Language Development in 3-Year-Old Rural Ugandan Children