Original Research

Published on 22 Dec 2022

AbAgIntPre: A deep learning method for predicting antibody-antigen interactions based on sequence information

in Systems Immunology

Yan Huang
Ziding Zhang
Yuan Zhou

Frontiers in Immunology

doi 10.3389/fimmu.2022.1053617

15,445 views
13 citations

Original Research

Published on 19 Dec 2022

Construction of prediction model of inflammation related genes in idiopathic pulmonary fibrosis and its correlation with immune microenvironment

in Systems Immunology

Ying-Qiu Yin
Feng Peng
Hui-Jing Situ
Jun-Ling Xie
Liming Tan
Jie Wei
Fang-fang Jiang
Shan-Qiang Zhang
Jun Liu

Frontiers in Immunology

doi 10.3389/fimmu.2022.1010345

3,243 views
4 citations

Original Research

Published on 15 Dec 2022

Longitudinal immune profiling after radiation-attenuated sporozoite vaccination reveals coordinated immune processes correlated with malaria protection

in Systems Immunology

Fergal J. Duffy
Nina Hertoghs
Ying Du
Maxwell L. Neal
Damian Oyong
Suzanne McDermott
Nana Minkah
Jason Carnes
Katharine V. Schwedhelm
M. Juliana McElrath

Frontiers in Immunology

doi 10.3389/fimmu.2022.1042741

3,872 views
7 citations

Original Research

Published on 14 Dec 2022

Tuberculosis alters immune-metabolic pathways resulting in perturbed IL-1 responses

in Systems Immunology

Alba Llibre
Nikaïa Smith
Vincent Rouilly
Munyaradzi Musvosvi
Elisa Nemes
Céline Posseme
Simbarashe Mabwe
Bruno Charbit
Stanley Kimbung Mbandi
Elizabeth Filander

Frontiers in Immunology

doi 10.3389/fimmu.2022.897193

3,944 views
5 citations

Original Research

Published on 12 Dec 2022

Development and validation of the prognostic model based on autophagy-associated genes in idiopathic pulmonary fibrosis

in Systems Immunology

Guoqing Fan
Jingjing Liu
Zhen Wu
Caiyu Li
Ying Zhang

Frontiers in Immunology

doi 10.3389/fimmu.2022.1049361

5,417 views
5 citations

Original Research

Published on 06 Dec 2022

Genome-wide identification of antisense lncRNAs and their association with susceptibility to Flavobacterium psychrophilum in rainbow trout

in Systems Immunology

Ali Ali
Mohamed Salem

Frontiers in Immunology

doi 10.3389/fimmu.2022.1050722

2,005 views
3 citations

Perspective

Published on 05 Dec 2022

Boolean modeling reveals that cyclic attractors in macrophage polarization serve as reservoirs of states to balance external perturbations from the tumor microenvironment

in Systems Immunology

Ugo Avila-Ponce de León
Aarón Vázquez-Jiménez
Meztli Matadamas-Guzmán
Osbaldo Resendis-Antonio

Frontiers in Immunology

doi 10.3389/fimmu.2022.1012730

1,956 views
5 citations

Original Research

Published on 05 Dec 2022

Analysis of m7G methylation modification patterns and pulmonary vascular immune microenvironment in pulmonary arterial hypertension

in Systems Immunology

Desheng Wang
Yanfei Mo
Dongfang Zhang
Yang Bai

Frontiers in Immunology

doi 10.3389/fimmu.2022.1014509

3,578 views
3 citations

Original Research

Published on 29 Nov 2022

Three-dimensional analyses of vascular network morphology in a murine lymph node by X-ray phase-contrast tomography with a 2D Talbot array

in Systems Immunology

Florian L. Schwarzenberg
Paul Schütz
Jörg U. Hammel
Mirko Riedel
Jasmin Bartl
Sharareh Bordbari
Svea-Celina Frank
Bernd Walkenfort
Madleen Busse
Julia Herzen

Frontiers in Immunology

doi 10.3389/fimmu.2022.947961

5,392 views
5 citations

Original Research

Published on 25 Nov 2022

Identification of two robust subclasses of sepsis with both prognostic and therapeutic values based on machine learning analysis

in Systems Immunology

Wei Zhou
Chunyu Zhang
Zhongwei Zhuang
Jing Zhang
Chunlong Zhong

Frontiers in Immunology

doi 10.3389/fimmu.2022.1040286

4,308 views
4 citations

Original Research

Published on 21 Nov 2022

Preparing for the next pandemic: Simulation-based deep reinforcement learning to discover and test multimodal control of systemic inflammation using repurposed immunomodulatory agents

in Systems Immunology

Chase Cockrell
Dale Larie
Gary An

Frontiers in Immunology

doi 10.3389/fimmu.2022.995395

2,847 views
5 citations

Methods

Published on 17 Nov 2022

Integrated machine learning approaches for flow cytometric quantification of myeloid-derived suppressor cells in acute sepsis

in Systems Immunology

Anthony S. Bonavia
Abigail Samuelsen
Joshua Luthy
E. Scott Halstead

Frontiers in Immunology

doi 10.3389/fimmu.2022.1007016

3,100 views
1 citation

Perspective

Published on 07 Nov 2022

Single-cell profiling to transform immunotherapy usage and target discovery in immune-mediated inflammatory diseases

in Systems Immunology

Nicolas Chapelle
Aurelie Fantou
Thomas Marron
Ephraim Kenigsberg
Miriam Merad
Jerome C. Martin

Frontiers in Immunology

doi 10.3389/fimmu.2022.1006944

2,605 views
1 citation

Original Research

Published on 04 Nov 2022

Identifying hub genes of calcific aortic valve disease and revealing the immune infiltration landscape based on multiple WGCNA and single-cell sequence analysis

in Systems Immunology

Kan Wang
Qiang Zheng
Xing Liu
BingChuan Geng
NianGuo Dong
JiaWei Shi

Frontiers in Immunology

doi 10.3389/fimmu.2022.1035285

14,933 views
5 citations

Original Research

Published on 03 Nov 2022

Moving the needle: Employing deep reinforcement learning to push the boundaries of coarse-grained vaccine models

in Systems Immunology

Jonathan G. Faris
Daniel Orbidan
Charles Wells
Brenden K. Petersen
Kayla G. Sprenger

Frontiers in Immunology

doi 10.3389/fimmu.2022.1029167

3,042 views
5 citations

Original Research

Published on 03 Nov 2022

Exploration of blood−derived coding and non-coding RNA diagnostic immunological panels for COVID-19 through a co-expressed-based machine learning procedure

in Systems Immunology

Mohadeseh Zarei Ghobadi
Rahman Emamzadeh
Majid Teymoori-Rad
Elaheh Afsaneh

Frontiers in Immunology

doi 10.3389/fimmu.2022.1001070

2,860 views
16 citations

Navigation group

Articles

AbAgIntPre: A deep learning method for predicting antibody-antigen interactions based on sequence information

Construction of prediction model of inflammation related genes in idiopathic pulmonary fibrosis and its correlation with immune microenvironment

Longitudinal immune profiling after radiation-attenuated sporozoite vaccination reveals coordinated immune processes correlated with malaria protection

Tuberculosis alters immune-metabolic pathways resulting in perturbed IL-1 responses

Development and validation of the prognostic model based on autophagy-associated genes in idiopathic pulmonary fibrosis

Genome-wide identification of antisense lncRNAs and their association with susceptibility to Flavobacterium psychrophilum in rainbow trout

Boolean modeling reveals that cyclic attractors in macrophage polarization serve as reservoirs of states to balance external perturbations from the tumor microenvironment

Analysis of m7G methylation modification patterns and pulmonary vascular immune microenvironment in pulmonary arterial hypertension

Three-dimensional analyses of vascular network morphology in a murine lymph node by X-ray phase-contrast tomography with a 2D Talbot array

Identification of two robust subclasses of sepsis with both prognostic and therapeutic values based on machine learning analysis

Preparing for the next pandemic: Simulation-based deep reinforcement learning to discover and test multimodal control of systemic inflammation using repurposed immunomodulatory agents

Integrated machine learning approaches for flow cytometric quantification of myeloid-derived suppressor cells in acute sepsis

Single-cell profiling to transform immunotherapy usage and target discovery in immune-mediated inflammatory diseases

Identifying hub genes of calcific aortic valve disease and revealing the immune infiltration landscape based on multiple WGCNA and single-cell sequence analysis

Moving the needle: Employing deep reinforcement learning to push the boundaries of coarse-grained vaccine models

Exploration of blood−derived coding and non-coding RNA diagnostic immunological panels for COVID-19 through a co-expressed-based machine learning procedure