Frontiers in Genetics | Statistical Genetics and Methodology

Original Research

Accepted on 17 Jan 2025

ADAM-Multi: Software to simulate complex breeding programs for animals and plants with different ploidy levels and generalized genotypic effect models to account for multiple alleles

in Statistical Genetics and Methodology

Thinh Tuan Chu
Just Jensen

Frontiers in Genetics

doi 10.3389/fgene.2025.1513615

Original Research

Published on 07 Jan 2025

Dual disease co-expression analysis reveals potential roles of estrogen-related genes in postmenopausal osteoporosis and Parkinson’s disease

in Statistical Genetics and Methodology

Dongdong Yu
Jian Kang
Chengguo Ju
Qingyan Wang
Ye Qiao
Long Qiao
Dongxiang Yang

Frontiers in Genetics

doi 10.3389/fgene.2024.1518471

193 views

Review

Published on 07 Jan 2025

Recent advances in deep learning and language models for studying the microbiome

in Statistical Genetics and Methodology

Binghao Yan
Yunbi Nam
Lingyao Li
Rebecca A. Deek
Hongzhe Li
Siyuan Ma

Frontiers in Genetics

doi 10.3389/fgene.2024.1494474

380 views

Original Research

Accepted on 20 Dec 2024

A Comparison of Design Algorithms for Choosing the Training Population in Genomic Models Genomic Experiments

in Statistical Genetics and Methodology

Alexandra Stadler
Werner G. Müller
Andreas Futschik

Frontiers in Genetics

doi 10.3389/fgene.2024.1462855

Original Research

Published on 13 Dec 2024

A two-sample Mendelian randomization study reveals the causal effects of statin medication on gut microbiota abundance in the European population

in Statistical Genetics and Methodology

Peng Zhou
Chen Qiu
Zequn Zhuang
Kaihang Shi
Zhihui Yang
Yuyan Ding
Huiheng Qu
Jiazeng Xia

Frontiers in Genetics

doi 10.3389/fgene.2024.1380830

664 views

Original Research

Accepted on 11 Dec 2024

Mendelian Randomization Analysis Reveals Genetic Evidence for a Causal Link Between Inflammatory Bowel Disease and Uterine Cervical Neoplasms

in Statistical Genetics and Methodology

Chunge Cao
Hu Zhao
Xiaohu Chen
Liqiang Zhu
Dajun Cai
Chaoyan Yue

Frontiers in Genetics

doi 10.3389/fgene.2024.1436512

Original Research

Published on 11 Dec 2024

Association between arthropathies and postpartum hemorrhage: a bidirectional Mendelian randomization study

in Statistical Genetics and Methodology

Zhao Wu
Chengyu Yuan
Xue Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1448754

582 views

Original Research

Accepted on 10 Dec 2024

ZINQ-L: A Zero-Inflated Quantile Approach for Differential Abundance Analysis of Longitudinal Microbiome Data

in Statistical Genetics and Methodology

Shuai Li
Runzhe Li
John R Lee
Ni Zhao
Wodan Ling

Frontiers in Genetics

doi 10.3389/fgene.2024.1494401

166 views

Original Research

Published on 05 Dec 2024

Metabolic dysfunction-associated steatotic liver disease and gastroesophageal reflux disease: a mendelian randomization study in European and East Asian populations

in Statistical Genetics and Methodology

Chen’guang Su
Zheng Liao
Hewen Li
Yinxuan Pei
Zixiang Wang
Jian Li
Jinlong Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1428334

784 views

Original Research

Published on 04 Dec 2024

Identification of potential biomarkers from amino acid transporter in the activation of hepatic stellate cells via bioinformatics

in Statistical Genetics and Methodology

Yingying Zhao
Xueqing Xu
Huaiyang Cai
Wenhong Wu
Yingwei Wang
Cheng Huang
Heping Qin
Shuangyang Mo

Frontiers in Genetics

doi 10.3389/fgene.2024.1499915

641 views

Editorial

Published on 27 Nov 2024

Editorial: Multi-omics strategy toward identifying and managing hereditary and metabolic liver diseases

in Statistical Genetics and Methodology

Mingjie Wang
Sujun Zheng
Xinhua Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1520721

404 views

Original Research

Published on 21 Nov 2024

Mendelian randomization and bioinformatics unveil potential links between gut microbial genera and colorectal cancer

in Statistical Genetics and Methodology

Long Wu
Huan Wu
Fei Huang
Song Mu
Xiao-Yun Li
Bao-Fang Zhang
Yun-Huan Zhen
Hai-Yang Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1379003

1,007 views

Methods

Published on 20 Nov 2024

Structure-adaptive canonical correlation analysis for microbiome multi-omics data

in Statistical Genetics and Methodology

Linsui Deng
Yanlin Tang
Xianyang Zhang
Jun Chen

Frontiers in Genetics

doi 10.3389/fgene.2024.1489694

606 views

Original Research

Published on 15 Nov 2024

Enhanced visualization of microbiome data in repeated measures designs

in Statistical Genetics and Methodology

Amarise Little
Rebecca A. Deek
Angela Zhang
Ni Zhao
Wodan Ling
Michael C. Wu

Frontiers in Genetics

doi 10.3389/fgene.2024.1480972

566 views

Original Research

Published on 15 Nov 2024

Gut Microbiota’s role in lipoma development: evidence from mendelian randomization

in Statistical Genetics and Methodology

Yuxin Li
Jiahao Chen
Hang Yao
Xiaogang Xu
Xianglong Zheng
Yu Wang
Wanchun Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1430671

856 views

Original Research

Published on 12 Nov 2024

Multi-omics insights implicate the remodeling of the intestinal structure and microbiome in aging

in Statistical Genetics and Methodology

Shaohua Chen
Chengbang Wang
Xiong Zou
Hanwen Li
Guanglin Yang
Xiaotao Su
Zengnan Mo

Frontiers in Genetics

doi 10.3389/fgene.2024.1450064

1,124 views

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Articles

ADAM-Multi: Software to simulate complex breeding programs for animals and plants with different ploidy levels and generalized genotypic effect models to account for multiple alleles

Dual disease co-expression analysis reveals potential roles of estrogen-related genes in postmenopausal osteoporosis and Parkinson’s disease

Recent advances in deep learning and language models for studying the microbiome

A Comparison of Design Algorithms for Choosing the Training Population in Genomic Models Genomic Experiments

A two-sample Mendelian randomization study reveals the causal effects of statin medication on gut microbiota abundance in the European population

Mendelian Randomization Analysis Reveals Genetic Evidence for a Causal Link Between Inflammatory Bowel Disease and Uterine Cervical Neoplasms

Association between arthropathies and postpartum hemorrhage: a bidirectional Mendelian randomization study

ZINQ-L: A Zero-Inflated Quantile Approach for Differential Abundance Analysis of Longitudinal Microbiome Data

Metabolic dysfunction-associated steatotic liver disease and gastroesophageal reflux disease: a mendelian randomization study in European and East Asian populations

Identification of potential biomarkers from amino acid transporter in the activation of hepatic stellate cells via bioinformatics

Editorial: Multi-omics strategy toward identifying and managing hereditary and metabolic liver diseases

Mendelian randomization and bioinformatics unveil potential links between gut microbial genera and colorectal cancer

Structure-adaptive canonical correlation analysis for microbiome multi-omics data

Enhanced visualization of microbiome data in repeated measures designs

Gut Microbiota’s role in lipoma development: evidence from mendelian randomization

Multi-omics insights implicate the remodeling of the intestinal structure and microbiome in aging