Frontiers in Genetics | Computational Genomics

Original Research

Published on 18 Jun 2024

A comparative analysis of RNA-Seq and NanoString technologies in deciphering viral infection response in upper airway lung organoids

in Computational Genomics

Mostafa Rezapour
Stephen J. Walker
David A. Ornelles
Muhammad Khalid Khan Niazi
Patrick M. McNutt
Anthony Atala
Metin Nafi Gurcan

Frontiers in Genetics

doi 10.3389/fgene.2024.1327984

4,928 views
3 citations

Original Research

Published on 17 Jun 2024

Identification of DNA motif pairs on paired sequences based on composite heterogeneous graph

in Computational Genomics

Qiuqin Wu
Yang Li
Qi Wang
Xiaoyu Zhao
Duanchen Sun
Bingqiang Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1424085

1,188 views

Original Research

Published on 14 Jun 2024

DKPE-GraphSYN: a drug synergy prediction model based on joint dual kernel density estimation and positional encoding for graph representation

in Computational Genomics

Yunyun Dong
Yujie Bai
Haitao Liu
Ziting Yang
Yunqing Chang
Jianguang Li
Qixuan Han
Xiufang Feng
Xiaole Fan
Xiaoqiang Ren

Frontiers in Genetics

doi 10.3389/fgene.2024.1401544

1,320 views
1 citation

Original Research

Published on 11 Jun 2024

Uncovering periodontitis-associated markers through the aggregation of transcriptomics information from diverse sources

in Computational Genomics

Chujun Peng
Jinhang Huang
Mingyue Li
Guanru Liu
Lingxian Liu
Jiechun Lin
Weijun Sun
Hongtao Liu
Yonghui Huang
Xin Chen

Frontiers in Genetics

doi 10.3389/fgene.2024.1398582

1,601 views
1 citation

Original Research

Published on 10 Jun 2024

Single-cell analysis and machine learning identify psoriasis-associated CD8+ T cells serve as biomarker for psoriasis

in Computational Genomics

Sijia He
Lyuye Liu
Xiaoyan Long
Man Ge
Menghan Cai
Junling Zhang

Frontiers in Genetics

doi 10.3389/fgene.2024.1387875

1,948 views
6 citations

Systematic Review

Published on 06 Jun 2024

Bibliometric analysis of kinship analysis from 1960 to 2023: global trends and development

in Computational Genomics

Yanchen Liu
Chaoran Sun
Haoyuan Si
Zixuan Peng
Liya Gu
Xiangnan Guo
Feng Song

Frontiers in Genetics

doi 10.3389/fgene.2024.1401898

1,940 views

Original Research

Published on 05 Jun 2024

LGC-DBP: the method of DNA-binding protein identification based on PSSM and deep learning

in Computational Genomics

Yiqi Zhu
Ailun Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1411847

1,071 views
1 citation

Original Research

Published on 04 Jun 2024

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis

in Computational Genomics

Zhongyi Sun
Yanan Hu
Jiachen Qu
Qiuyue Zhao
Han Gao
Zhiyong Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1389630

2,416 views

Original Research

Published on 30 May 2024

Prediction of miRNAs and diseases association based on sparse autoencoder and MLP

in Computational Genomics

Si-Lin Sun
Bing-Wei Zhou
Sheng-Zheng Liu
Yu-Han Xiu
Anas Bilal
Hai-Xia Long

Frontiers in Genetics

doi 10.3389/fgene.2024.1369811

1,338 views
1 citation

Review

Published on 30 May 2024

A war on many fronts: cross disciplinary approaches for novel cancer treatment strategies

in Computational Genomics

Adriana Del Pino Herrera
Meghan C. Ferrall-Fairbanks

Frontiers in Genetics

doi 10.3389/fgene.2024.1383676

1,667 views

Original Research

Published on 28 May 2024

Identification of biomarkers associated with ferroptosis in diabetic retinopathy based on WGCNA and machine learning

in Computational Genomics

Hui-qing Guo
Rong Xue
Guangming Wan

Frontiers in Genetics

doi 10.3389/fgene.2024.1376771

1,565 views
2 citations

Methods

Published on 23 May 2024

Specific feature recognition on group specific networks (SFR-GSN): a biomarker identification model for cancer stages

in Computational Genomics

Bolin Chen
Yuxin Wang
Jinlei Zhang
Yourui Han
Hamza Benhammouda
Jun Bian
Ruiming Kang
Xuequn Shang

Frontiers in Genetics

doi 10.3389/fgene.2024.1407072

965 views
3 citations

Original Research

Published on 17 May 2024

Designing a multi-epitope vaccine against Shigella dysenteriae using immuno-informatics approach

in Computational Genomics

Hurria Qureshi
Amina Basheer
Muhammad Faheem
Muhammad Waqar Arshad
Sunil Kumar Rai
Syed Babar Jamal

Frontiers in Genetics

doi 10.3389/fgene.2024.1361610

2,445 views
2 citations

Original Research

Published on 10 May 2024

LcDel: deletion variation detection based on clustering and long reads

in Computational Genomics

Yanan Yu
Runtian Gao
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1404415

1,031 views

Original Research

Published on 10 May 2024

BJLD-CMI: a predictive circRNA-miRNA interactions model combining multi-angle feature information

in Computational Genomics

Yi-Xin Zhao
Chang-Qing Yu
Li-Ping Li
Deng-Wu Wang
Hui-Fan Song
Yu Wei

Frontiers in Genetics

doi 10.3389/fgene.2024.1399810

1,202 views
1 citation

Original Research

Published on 09 May 2024

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

in Computational Genomics

Bingran Shen
Gloria M. Coruzzi
Dennis Shasha

Frontiers in Genetics

doi 10.3389/fgene.2024.1371607

1,815 views
1 citation