Original Research

Published on 26 Jul 2024

Identification and experimental validation of programmed cell death- and mitochondria-associated biomarkers in osteoporosis and immune microenvironment

in Computational Genomics

Xiu Yang
Zheng-Chao Zhang
Yun-Nan Lu
Han-Lin Chen
Hong-Shen Wang
Tao Lin
Qing-Quan Chen
Jin-Shui Chen
Wu-Bing He

Frontiers in Genetics

doi 10.3389/fgene.2024.1439171

1,231 views

Methods

Published on 26 Jul 2024

AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline

in Computational Genomics

Chao Liu
Pei Wu
Xue Wu
Xia Zhao
Fang Chen
Xiaofang Cheng
Hongmei Zhu
Ou Wang
Mengyang Xu

Frontiers in Genetics

doi 10.3389/fgene.2024.1421565

1,064 views

Original Research

Published on 24 Jul 2024

Identification and validation of aging-related genes in neuropathic pain using bioinformatics

in Computational Genomics

Hui Gao
Guoqi Dong
Yong Yao
Huayuan Yang

Frontiers in Genetics

doi 10.3389/fgene.2024.1430275

1,625 views

Original Research

Published on 16 Jul 2024

An integrated bioinformatics analysis to identify the shared biomarkers in patients with obstructive sleep apnea syndrome and nonalcoholic fatty liver disease

in Computational Genomics

Rou Zhang
Zhijuan Liu
Ran Li
Xiaona Wang
Li Ai
Yongxia Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1356105

1,336 views

Correction

Published on 16 Jul 2024

Corrigendum: Hyperglycemia decreases epithelial cell proliferation and attenuates neutrophil activity by reducing ICAM-1 and LFA-1 expression levels

in Computational Genomics

Dongxu Qiu
Lei Zhang
Junkun Zhan
Qiong Yang
Hongliang Xiong
Weitong Hu
Qiao Ji
Jiabing Huang

Frontiers in Genetics

doi 10.3389/fgene.2024.1431933

486 views

Original Research

Published on 15 Jul 2024

MGPPI: multiscale graph neural networks for explainable protein–protein interaction prediction

in Computational Genomics

Shiwei Zhao
Zhenyu Cui
Gonglei Zhang
Yanlong Gong
Lingtao Su

Frontiers in Genetics

doi 10.3389/fgene.2024.1440448

1,105 views

Original Research

Published on 11 Jul 2024

Cross-species single-cell landscapes identify the pathogenic gene characteristics of inherited retinal diseases

in Computational Genomics

Hualei Hu
Fei Liu
Pan Gao
Yuwen Huang
Danna Jia
Jamas Reilly
Xiang Chen
Yunqiao Han
Kui Sun
Jiong Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1409016

1,548 views

Original Research

Published on 10 Jul 2024

Relationships between systemic sclerosis and atherosclerosis: screening for mitochondria-related biomarkers

in Computational Genomics

Fei Wang
Xiao Yan Lyu
Yi Ming Qin
Mei Juan Xie

Frontiers in Genetics

doi 10.3389/fgene.2024.1375331

1,552 views

Methods

Published on 10 Jul 2024

PSPI: A deep learning approach for prokaryotic small protein identification

in Computational Genomics

Matthew Weston
Haiyan Hu
Xiaoman Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1439423

1,158 views

Original Research

Published on 10 Jul 2024

GIHP: Graph convolutional neural network based interpretable pan-specific HLA-peptide binding affinity prediction

in Computational Genomics

Lingtao Su
Yan Yan
Bo Ma
Shiwei Zhao
Zhenyu Cui

Frontiers in Genetics

doi 10.3389/fgene.2024.1405032

907 views

Original Research

Published on 10 Jul 2024

Stacked generalization as a computational method for the genomic selection

in Computational Genomics

Sunhee Kim
Sang-Ho Chu
Yong-Jin Park
Chang-Yong Lee

Frontiers in Genetics

doi 10.3389/fgene.2024.1401470

658 views

Original Research

Published on 09 Jul 2024

HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data

in Computational Genomics

Zhendong Zhang
Yue Liu
Xin Li
Yadong Liu
Yadong Wang
Tao Jiang

Frontiers in Genetics

doi 10.3389/fgene.2024.1435087

1,014 views

Original Research

Published on 01 Jul 2024

Bioinformatics analysis of the association between obesity and gastric cancer

in Computational Genomics

Xiaole Ma
Miao Cui
Yuntong Guo

Frontiers in Genetics

doi 10.3389/fgene.2024.1385559

1,300 views

Original Research

Published on 27 Jun 2024

Development and evaluation of a chronic kidney disease risk prediction model using random forest

in Computational Genomics

Krish Mendapara

Frontiers in Genetics

doi 10.3389/fgene.2024.1409755

1,602 views

Original Research

Published on 26 Jun 2024

Identification of differentially expressed genes of blood leukocytes for Schizophrenia

in Computational Genomics

Feifan Wang
Yao Fan
Yinghui Li
Yuan Zhou
Xin Wang
Mengya Zhu
Xuefei Chen
Yong Xue
Chong Shen

Frontiers in Genetics

doi 10.3389/fgene.2024.1398240

1,202 views
1 citation

Original Research

Published on 21 Jun 2024

Integrative analysis of cancer multimodality data identifying COPS5 as a novel biomarker of diffuse large B-cell lymphoma

in Computational Genomics

Yutong Dai
Jingmei Li
Keita Yamamoto
Susumu Goyama
Martin Loza
Sung-Joon Park
Kenta Nakai

Frontiers in Genetics

doi 10.3389/fgene.2024.1407765

1,110 views

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Articles

Identification and experimental validation of programmed cell death- and mitochondria-associated biomarkers in osteoporosis and immune microenvironment

AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline

Identification and validation of aging-related genes in neuropathic pain using bioinformatics

An integrated bioinformatics analysis to identify the shared biomarkers in patients with obstructive sleep apnea syndrome and nonalcoholic fatty liver disease

Corrigendum: Hyperglycemia decreases epithelial cell proliferation and attenuates neutrophil activity by reducing ICAM-1 and LFA-1 expression levels

MGPPI: multiscale graph neural networks for explainable protein–protein interaction prediction

Cross-species single-cell landscapes identify the pathogenic gene characteristics of inherited retinal diseases

Relationships between systemic sclerosis and atherosclerosis: screening for mitochondria-related biomarkers

PSPI: A deep learning approach for prokaryotic small protein identification

GIHP: Graph convolutional neural network based interpretable pan-specific HLA-peptide binding affinity prediction

Stacked generalization as a computational method for the genomic selection

HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data

Bioinformatics analysis of the association between obesity and gastric cancer

Development and evaluation of a chronic kidney disease risk prediction model using random forest

Identification of differentially expressed genes of blood leukocytes for Schizophrenia

Integrative analysis of cancer multimodality data identifying COPS5 as a novel biomarker of diffuse large B-cell lymphoma