Original Research

Published on 08 Sep 2023

Comprehensive analysis of mitophagy-related genes in diagnosis and heterogeneous endothelial cells in chronic rhinosinusitis: based on bulk and single-cell RNA sequencing data

in Computational Genomics

Shican Zhou
Kai Fan
Ju Lai
Shiwang Tan
Zimu Zhang
Jingwen Li
Xiayue Xu
Chunyan Yao
BoJin Long
Chuanliang Zhao

Frontiers in Genetics

doi 10.3389/fgene.2023.1228028

3,493 views
1 citation

Editorial

Published on 08 Sep 2023

Editorial: Predicting high-risk individuals for common diseases using multi-omics and epidemiological data, volume II

in Computational Genomics

Werner P. Veldsman
Xin Maizie Zhou
YuanWei Zhang
Bailiang Li
Lu Zhang

Frontiers in Genetics

doi 10.3389/fgene.2023.1280648

1,103 views

Original Research

Published on 07 Sep 2023

MBMethPred: a computational framework for the accurate classification of childhood medulloblastoma subgroups using data integration and AI-based approaches

in Computational Genomics

Edris Sharif Rahmani
Ankita Lawarde
Prakash Lingasamy
Sergio Vela Moreno
Andres Salumets
Vijayachitra Modhukur

Frontiers in Genetics

doi 10.3389/fgene.2023.1233657

4,222 views
3 citations

Methods

Published on 06 Sep 2023

Intra-FCY1: a novel system to identify mutations that cause protein misfolding

in Computational Genomics

N. Quan
Y. Eguchi
K. Geiler-Samerotte

Frontiers in Genetics

doi 10.3389/fgene.2023.1198203

2,318 views

Original Research

Published on 05 Sep 2023

A novel marker integrating multiple genetic alterations better predicts platinum sensitivity in ovarian cancer than HRD score

in Computational Genomics

Fan Yang
Wei Wei
Ganghua Li
Qiongyu Lan
Xiwei Liu
Lin Gao
Chao Zhang
Jiangtao Fan
Jundong Li

Frontiers in Genetics

doi 10.3389/fgene.2023.1240068

2,038 views

Correction

Published on 05 Sep 2023

Corrigendum: A microarray data analysis investigating the pathogenesis and potential biomarkers of autophagy and ferroptosis in intervertebral disc degeneration

in Computational Genomics

Wenhao Kuang
Cong Jiang
Cheng Yu
Jinwei Hu
Yang Duan
Zhong Chen

Frontiers in Genetics

doi 10.3389/fgene.2023.1236744

1,276 views

Original Research

Published on 31 Aug 2023

Gene network inference from single-cell omics data and domain knowledge for constructing COVID-19-specific ICAM1-associated pathways

in Computational Genomics

Mitsuhiro Odaka
Morgan Magnin
Katsumi Inoue

Frontiers in Genetics

doi 10.3389/fgene.2023.1250545

2,098 views
1 citation

Brief Research Report

Published on 31 Aug 2023

Prediction of distinct populations of innate lymphoid cells by transcriptional profiles

in Computational Genomics

Haiyao Dong
Zhenguang Du
Haoming Ma
Zhicheng Zhou
Haitao Yang
Zhenyuan Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1227452

1,520 views

Original Research

Published on 29 Aug 2023

A meta-analysis of microarray datasets to identify biological regulatory networks in Alzheimer’s disease

in Computational Genomics

Kimia Sadat Hashemi
Mohadese Koohi Aliabadi
Arian Mehrara
Elham Talebi
Ali Akbar Hemmati
Radin Dabbagh Rezaeiye
Mohammad Javad Ghanbary
Maryam Motealleh
Behnaz Dayeri
Shayan Khalili Alashti

Frontiers in Genetics

doi 10.3389/fgene.2023.1225196

3,899 views
2 citations

Technology and Code

Published on 24 Aug 2023

EasySSR: a user-friendly web application with full command-line features for large-scale batch microsatellite mining and samples comparison

in Computational Genomics

Sandy Ingrid Aguiar Alves
Victor Benedito Costa Ferreira
Carlos Willian Dias Dantas
Artur Luiz da Costa da Silva
Rommel Thiago Jucá Ramos

Frontiers in Genetics

doi 10.3389/fgene.2023.1228552

3,425 views
2 citations

Original Research

Published on 24 Aug 2023

An efficient convolutional neural network-based diagnosis system for citrus fruit diseases

in Computational Genomics

Zhangcai Huang
Xiaoxiao Jiang
Shaodong Huang
Sheng Qin
Su Yang

Frontiers in Genetics

doi 10.3389/fgene.2023.1253934

2,004 views
3 citations

Original Research

Published on 23 Aug 2023

PSF toolkit: an R package for pathway curation and topology-aware analysis

in Computational Genomics

Siras Hakobyan
Ani Stepanyan
Lilit Nersisyan
Hans Binder
Arsen Arakelyan

Frontiers in Genetics

doi 10.3389/fgene.2023.1264656

3,141 views
3 citations

Original Research

Published on 21 Aug 2023

GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning

in Computational Genomics

Nur Sebnem Ersoz
Burcu Bakir-Gungor
Malik Yousef

Frontiers in Genetics

doi 10.3389/fgene.2023.1139082

3,411 views
8 citations

Original Research

Published on 21 Aug 2023

Identification and verification of novel immune-related ferroptosis signature with excellent prognostic predictive and clinical guidance value in hepatocellular carcinoma

in Computational Genomics

Wenxiu Jiang
Lili Wang
Yajuan Zhang
Hongliang Li

Frontiers in Genetics

doi 10.3389/fgene.2023.1112744

1,520 views

Brief Research Report

Published on 21 Aug 2023

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning

in Computational Genomics

Hong Ju
Jie Bai
Jing Jiang
Yusheng Che
Xin Chen

Frontiers in Genetics

doi 10.3389/fgene.2023.1254827

1,454 views
1 citation

Technology and Code

Published on 17 Aug 2023

Accelerated matrix-vector multiplications for matrices involving genotype covariates with applications in genomic prediction

in Computational Genomics

Alexander Freudenberg
Jeremie Vandenplas
Martin Schlather
Torsten Pook
Ross Evans
Jan Ten Napel

Frontiers in Genetics

doi 10.3389/fgene.2023.1220408

2,191 views
1 citation

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Articles

Comprehensive analysis of mitophagy-related genes in diagnosis and heterogeneous endothelial cells in chronic rhinosinusitis: based on bulk and single-cell RNA sequencing data

Editorial: Predicting high-risk individuals for common diseases using multi-omics and epidemiological data, volume II

MBMethPred: a computational framework for the accurate classification of childhood medulloblastoma subgroups using data integration and AI-based approaches

Intra-FCY1: a novel system to identify mutations that cause protein misfolding

A novel marker integrating multiple genetic alterations better predicts platinum sensitivity in ovarian cancer than HRD score

Corrigendum: A microarray data analysis investigating the pathogenesis and potential biomarkers of autophagy and ferroptosis in intervertebral disc degeneration

Gene network inference from single-cell omics data and domain knowledge for constructing COVID-19-specific ICAM1-associated pathways

Prediction of distinct populations of innate lymphoid cells by transcriptional profiles

A meta-analysis of microarray datasets to identify biological regulatory networks in Alzheimer’s disease

EasySSR: a user-friendly web application with full command-line features for large-scale batch microsatellite mining and samples comparison

An efficient convolutional neural network-based diagnosis system for citrus fruit diseases

PSF toolkit: an R package for pathway curation and topology-aware analysis

GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning

Identification and verification of novel immune-related ferroptosis signature with excellent prognostic predictive and clinical guidance value in hepatocellular carcinoma

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning

Accelerated matrix-vector multiplications for matrices involving genotype covariates with applications in genomic prediction