Frontiers in Bioinformatics | Data Visualization

Brief Research Report

Accepted on 18 Apr 2025

pubCounteR: an R package for interrogating published literature for experimentally-derived gene lists within a user-defined biological context

in Data Visualization

Marina Leer
George A. Soultoukis
Markus Jähnert
Masoome Oveisi
Dirk Walther
Tim J. Schulz

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1523184

Original Research

Published on 10 Sep 2024

Visual analysis of multi-omics data

in Data Visualization

Austin Swart
Ron Caspi
Suzanne Paley
Peter D. Karp

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1395981

1,226 views

Brief Research Report

Published on 02 Sep 2024

Rvisdiff: An R package for interactive visualization of differential expression

in Data Visualization

David Barrios
Carlos Prieto

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1349205

1,092 views

Perspective

Published on 21 Aug 2024

Design principles for molecular animation

in Data Visualization

Stuart G. Jantzen
Gaël McGill
Jodie Jenkinson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1353807

1,825 views

Technology and Code

Published on 09 Aug 2024

RIPS (rapid intuitive pathogen surveillance): a tool for surveillance of genome sequence data from foodborne bacterial pathogens

in Data Visualization

Tim Muruvanda
Hugh Rand
James Pettengill
Arthur Pightling

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1415078

1,190 views

Review

Published on 11 Apr 2024

From complex data to clear insights: visualizing molecular dynamics trajectories

in Data Visualization

Hayet Belghit
Mariano Spivak
Manuel Dauchez
Marc Baaden
Jessica Jonquet-Prevoteau

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1356659

4,821 views
7 citations

Methods

Published on 05 Feb 2024

Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs

in Data Visualization

Jannes Peeters
Daniël M. Bot
Gustavo Rovelo Ruiz
Jan Aerts

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1331043

2,331 views

Brief Research Report

Published on 31 Jan 2024

Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells

in Data Visualization

Aimer Gutierrez-Diaz
Steve Hoffmann
Juan Carlos Gallego-Gómez
Clara Isabel Bermudez-Santana

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1293412

1,622 views
1 citation

Original Research

Published on 22 Jan 2024

Assessing 2D visual encoding of 3D spatial connectivity

in Data Visualization

Benedetta F. Baldi
Jenny Vuong
Seán I. O’Donoghue

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1232671

1,223 views

Methods

Published on 04 Dec 2023

RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins

in Data Visualization

Joan Segura
Yana Rose
Chunxiao Bi
Jose Duarte
Stephen K. Burley
Sebastian Bittrich

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1311287

3,306 views
10 citations

Perspective

Published on 01 Nov 2023

Insights on poster preparation practices in life sciences

in Data Visualization

Helena Klara Jambor

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1216139

2,622 views
3 citations

Original Research

Published on 20 Sep 2023

NeighborNet: improved algorithms and implementation

in Data Visualization

David Bryant
Daniel H. Huson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1178600

3,639 views
17 citations

Original Research

Published on 12 Jul 2023

Visualization of automatically combined disease maps and pathway diagrams for rare diseases

in Data Visualization

Piotr Gawron
David Hoksza
Janet Piñero
Maria Peña-Chilet
Marina Esteban-Medina
Jose Luis Fernandez-Rueda
Vincenza Colonna
Ewa Smula
Laurent Heirendt
François Ancien

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1101505

2,623 views
3 citations

Original Research

Published on 19 Jun 2023

Microbiome maps: Hilbert curve visualizations of metagenomic profiles

in Data Visualization

Camilo Valdes
Vitalii Stebliankin
Daniel Ruiz-Perez
Ji In Park
Hajeong Lee
Giri Narasimhan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1154588

2,774 views
3 citations

Original Research

Published on 01 Jun 2023

Visualizing incompatibilities in phylogenetic trees using consensus outlines

in Data Visualization

Daniel H. Huson
Banu Cetinkaya

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1155286

3,041 views
5 citations

Methods

Published on 25 May 2023

ModEx: a general purpose computer model exploration system

in Data Visualization

Hamid Younesy
Joseph Pober
Torsten Möller
Mohammad M. Karimi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1153800

1,941 views